Academic Research
Comparative deep learning study classifying proteins into 18 functional categories.
ML Researcher EPFL / Academic 2022
Multi-architecture comparison using amino acid sequences and 3D structural data.
Stack
PyTorchGNNCNNLSTMscikit-learn
Context
Bioinformatics challenge classifying proteins into 18 functional categories using both amino acid sequences and 3D structural graph data.
Highlights
- ●Graph Neural Networks (HGP-SL) for 3D protein structure
- ●Fusion models combining GNN + MLP approaches
- ●Benchmark across GNN, CNN, LSTM, and logistic regression
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